Package: SAMprior 2.0.0

SAMprior: Self-Adapting Mixture (SAM) Priors

Implementation of the SAM prior and generation of its operating characteristics for dynamically borrowing information from historical data. For details, please refer to Yang et al. (2023) <doi:10.1111/biom.13927>.

Authors:Peng Yang [aut, cre], Ying Yuan [aut]

SAMprior_2.0.0.tar.gz
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SAMprior.pdf |SAMprior.html✨
SAMprior/json (API)
NEWS

# Install 'SAMprior' in R:

install.packages('SAMprior', repos = c('https://pengyang0411.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pengyang0411/samprior/issues

Datasets:

PS_SAM_data - Simulated Data for the Construction of Propensity Score-Integrated Informative Priors

On CRAN:

4.30 score 5 scripts 348 downloads 7 exports 69 dependencies

Last updated 1 months agofrom:34cee5cd1b. Checks:8 OK. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 16 2025
R-4.5-win	OK	Feb 16 2025
R-4.5-mac	OK	Feb 16 2025
R-4.5-linux	OK	Feb 16 2025
R-4.4-win	OK	Feb 16 2025
R-4.4-mac	OK	Feb 16 2025
R-4.3-win	OK	Feb 16 2025
R-4.3-mac	OK	Feb 16 2025

Exports:get_OC PS_prior PS_prior.beta PS_prior.default PS_prior.norm SAM_prior SAM_weight

Dependencies:abind assertthat backports bayesplot BH callr checkmate chk cli colorspace desc distributional dplyr fansi farver Formula generics ggplot2 ggridges glue gridExtra gtable inline isoband labeling lattice lifecycle loo magrittr MASS MatchIt Matrix matrixStats Metrics mgcv munsell mvtnorm nlme numDeriv pillar pkgbuild pkgconfig plyr posterior processx ps QuickJSR R6 RBesT RColorBrewer Rcpp RcppEigen RcppParallel RcppProgress reshape2 rlang rstan rstantools scales StanHeaders stringi stringr tensorA tibble tidyselect utf8 vctrs viridisLite withr

SAMprior for Binary Endpoints

Peng Yang and Ying Yuan

Rendered fromExample_binary.Rmdusingknitr::rmarkdownon Feb 16 2025.

Last update: 2023-09-30
Started: 2023-08-02

SAMprior for Continuous Endpoints

Peng Yang and Ying Yuan

Rendered fromExample_continuous.Rmdusingknitr::rmarkdownon Feb 16 2025.

Last update: 2023-09-30
Started: 2023-08-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Generating Operating Characteristics of SAM Priors	get_OC get_OC.betaMix get_OC.normMix
Calculating the Propensity Score-Integrated Informative Priors	PS_prior PS_prior.beta PS_prior.default PS_prior.norm
Simulated Data for the Construction of Propensity Score-Integrated Informative Priors	PS_SAM_data
Calculating SAM priors	SAM_prior SAM_prior.betaMix SAM_prior.gammaMix SAM_prior.normMix
Calculating Mixture Weight of SAM Priors	SAM_weight SAM_weight.betaMix SAM_weight.gammaMix SAM_weight.normMix